Hi
Even the top 5000 do not get into the IITs . Although , due to opening of new IITs , this no. has increased. Indian Institute of Technology (IIT) conduct a Joint Entrance Examination (JEE) every year for the  admission to its B-Tech and other courses offered at the IIT Mumbai, IIT Kanpur, IIT Delhi, IIT Chennai, IIT Kharakpur, IIT Guwahati, IIT Roorkee, IT Varanasi and ISM Dhanbad.  
Institute of                                  Technology, Banaras Hindu University, Varanasi, is one of the oldest                                  institutions devoted to education in various engineering disciplines.                                   Indian School of Mines University, Dhanbad, is the oldest institution of its                                  kind in India.  The admissions to the Undergraduate Programmes at these                                  institutions are also made through JEE.
This year JEE result also provided JEE 2009 Extended Merit list (JEE  EML). This list is not the waiting list for admission in any IITs, IT-BHU,  Varanasi and ISM Dhanbad.
This list is only meant for admission in few research oriented new Engineering colleges.
The Colleges which will take admission through JEE EML are-
1.  Indian Institute of Space Science and Technology
Thiruvananthapuram  - 695 022
http://www.iist.ac.in
2.  Indian Institute of Science education and Research
(a)   IISER Mohali,CHANDIGARH-160019
http://www.iisermohali.ac.in/
(b)  IISER Pune -411008
http://www.iiserpune.ac.in/
(c)  IISER  Kolkata-700106
http://www.iiserkol.ac.in/
(d)   IISER Bhopal - 462 023
http://www.iiserbhopal.ac.in/
(e) IISER Thiruvananthapuram- 695016
http://www.iisertvm.ac.in/

 3. Rajiv Gandhi Institute of Petroleum Technology Society (RGIPT)
Noida–201301, U.P
http://www.rgipt.in/
4. Indian  Institute of Maritime Studies (Merchant Navi)
MUMBAI-400033